AGIDB: Reference Panel

Reference Panel : Cat

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Note: Information and images are from open source data.

NCBI Taxonomy ID	Genome version	Genome size	Assembly level	Number of chromosomes	Number of SNPs	Number of samples

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Sample Information : Cat

Sample Id	Breed	Group	Sex	Tissue	Locality	Bases	Mapping Rate	Depth	Coverage	Project
FCAS02011000003	Chinese outbreed domestic cats	Q7	male	buccal swab	NA	40490347200	85.92	12.73	99.06610254	PRJNA478778
FCAS02026000003	Maine Coon	Q5	NA	NA	NA	60864617228	99.65	25.08	99.57361131	PRJEB7401
FCAS02011000018	Chinese outbreed domestic cats	Q7	male	buccal swab	NA	32020627800	92.91	10.88	98.48547209	PRJNA478778
FCAS02015000019	Domestic shorthair	Q1	NA	NA	NA	122593143084	99.48	30.08	99.64138656	PRJEB34554
FCAS02005000010	Bengal	Q3	NA	NA	NA	98699274866	99.61	36.94	99.66649717	PRJEB7401
FCAS02015000017	Domestic shorthair	Q2	NA	NA	NA	102534750359	99.36	36.69	99.59468585	PRJEB34554
FCAS02050000001	Toyger	Q2	male	EDTA whole blood	NA	133000000000	99.39	46.5	99.69694659	PRJNA740309
FCAS02011000022	Chinese outbreed domestic cats	Q7	male	skin	NA	32742897600	98.91	11.96	98.42934884	PRJNA478778
FCAS02005000004	Bengal	Q5	NA	NA	NA	118720785571	99.38	27.53	99.62023068	PRJEB34554
FCAS02023000001	Himalayan	Q2	male	whole blood	NA	150000000000	98.65	59.28	99.82053372	PRJNA343391

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